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About the Role

Bioptimus is building the first universal AI foundation model for biology to fuel breakthrough discoveries and accelerate innovation in biomedicine. We are looking for a highly organized and technically proficient Data Operations Lead to own and scale the operational lifecycle of biomedical data partnerships. In this critical role, you will serve as the bridge between external clinical and research partners, our internal Data team, and the engineering environment that powers our AI foundation models.

Responsibilities

Own the operational lifecycle of external data partnerships following contract signature.
Act as the primary operational and technical point of contact for hospitals, biobanks, CROs, and research laboratories.
Coordinate onboarding, data delivery timelines, and stakeholder communication to ensure successful execution of partnership milestones.
Manage secure biomedical data transfers using cloud infrastructure and standardized transfer protocols.
Coordinate access management, encryption, and ingestion workflows across cloud storage systems (AWS S3, SFTP, APIs, direct upload pipelines).
Ensure incoming datasets are delivered, validated, and tracked according to internal governance standards.
Collaborate with internal technical and product teams to define and maintain harmonized data models and metadata standards across complex clinical and multi-modal datasets.
Organize and maintain relationships between clinical metadata and associated omics or imaging assets, including genomics, transcriptomics, spatial biology, and pathology data.
Work closely with engineering and data teams to configure and maintain lightweight ingestion and QC pipelines.
Identify operational bottlenecks and repetitive workflows and convert them into scalable systems, scripts, templates, dashboards, or automation tools that improve operational efficiency and visibility.
Coordinate automated and manual quality control checks across incoming datasets.
Identify missing data, inconsistencies, corruption, or metadata mismatches and work directly with external partners to resolve issues.
Ensure data integrity, traceability, and version control throughout the ingestion process.
Maintain a centralized “single source of truth” for all incoming datasets, including ingestion status, completeness, QC status, and milestone tracking.
Build and maintain reporting dashboards and operational tools to provide visibility into project progress, ingestion velocity, and operational risks.
Partner closely with Data Science, Engineering, Legal, and Partnership teams to align operational execution with business and scientific priorities.
Communicate technical issues clearly to both scientific collaborators and non-technical stakeholders.
Provide regular updates on operational risks, blockers, and delivery progress.
Conduct periodic visits to partner hospitals, biobanks, and laboratories to support onboarding, troubleshoot technical or operational bottlenecks, and strengthen long-term collaborations.

Requirements

Team-first attitude; highly organized, proactive, and detail-oriented; thrive in a fast-paced and evolving environment.
Strong understanding of clinical and biomedical data structures, including real-world data, clinical trial datasets, and multi-omics data modalities.
Familiarity with oncology, immunology, or related therapeutic areas is highly desirable.
Proven experience managing data lifecycles in cloud environments, particularly AWS (S3, CLI, access management).
Familiarity with secure data transfer protocols and large-scale biomedical data handling workflows.
Proficiency in Python, along with SQL for querying and transforming datasets.
Ability to write lightweight scripts, automate workflows, and interact with APIs or cloud-based systems.
Demonstrated ability to manage multiple external collaborations and operational workstreams simultaneously.
Excellent communication skills, with the ability to translate technical issues into clear guidance for both scientific and non-technical stakeholders.
Comfortable working independently in ambiguous environments.
Strong analytical and organizational skills with the ability to identify bottlenecks, improve processes, and drive operational efficiency.
Bachelor’s or Master’s degree in Life Sciences, Bioinformatics, Health Informatics, Computer Science, or a related quantitative field.
Experience working directly with hospitals, biobanks, laboratories, or clinical research organizations.
Familiarity with biomedical data standards, anonymization, and compliance frameworks (GDPR, HIPAA).
Experience managing large-scale biomedical datasets in cloud environments, particularly AWS.
Knowledge of digital pathology and/or multi-omics data workflows.
Experience handling genomics and transcriptomics file formats (e.g. FASTQ, BAM, VCF, TIFF).
Experience building operational tracking tools, dashboards, or reporting systems.
Experience automating operational workflows using scripts, APIs, or lightweight pipelines.
Proven ability to manage cross-functional and external stakeholder relationships in complex data projects.

Skills

Python
SQL
AWS S3
AWS CLI
SFTP
APIs
Data Transfer Protocols
Data Harmonization
Metadata Standards
Quality Control
Data Integrity
Traceability
Version Control
Reporting Dashboards
Operational Tools
Biomedical Data
Clinical Data
Multi-omics Data
Genomics
Transcriptomics
Spatial Biology
Pathology Data
GDPR
HIPAA

Location

Remote
Paris

Work Type

Remote
Full-time

Experience Level

Lead

Education Level

Bachelor's degree
Master's degree

Benefits

Competitive salary and equity package
Flexible work arrangements, including remote options
Opportunities for professional growth and leadership development

About the Company

Bioptimus is building the first universal AI foundation model for biology to fuel breakthrough discoveries and accelerate innovation in biomedicine.
With more than $75M in funding, Bioptimus is a fast-growing start-up headquartered in Paris, incorporated in October 2023.
Backed by leading international venture capitalists, our world-class team of scientists and engineers is redefining the frontiers of AI and life sciences.

Equal Opportunity

We never discriminate based on race, religion, national origin, gender identity or expression, sexual orientation, age, or marital, or disability status.
Decisions related to hiring are made fairly, and we provide equal employment opportunities to all qualified candidates.
We take responsibility for always striving to create an inclusive environment that makes every employee and candidate feel welcome.